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1

Vacancy Clustering Behavior in Austenitic Stainless Steels and Nickel-chromium Alloys during Tensile Deformation after Hydrogen Charging; オーステナイト系ステンレス鋼およびニッケルクロム合金の水素添加後の引張変形過程における空孔のクラスター化挙動;

Sugita, Kazuki, Mizuno, Masataka, Araki, Hideki, Shirai, Yasuharu, Omura, Tomohiko, Tomatsu, Kota, Sakiyama, Yuji

Journal:

Tetsu-to-Hagane

Year:

2020

File:

PDF, 800 KB

2020

2

Multidimensional replica-exchange method for free-energy calculations

Sugita, Yuji, Kitao, Akio, Okamoto, Yuko

Journal:

The Journal of Chemical Physics

Year:

2000

Language:

english

File:

PDF, 361 KB

english, 2000

3

The relative timing of Lunar Magma Ocean solidification and the Late Heavy Bombardment inferred from highly degraded impact basin structures

Kamata, Shunichi, Sugita, Seiji, Abe, Yutaka, Ishihara, Yoshiaki, Harada, Yuji, Morota, Tomokatsu, Namiki, Noriyuki, Iwata, Takahiro, Hanada, Hideo, Araki, Hiroshi, Matsumoto, Koji, Tajika, Eiichi, Ku

Journal:

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

4

Dynamic Visualization of the Electric Potential in an All-Solid-State Rechargeable Lithium Battery

Kazuo Yamamoto, Yasutoshi Iriyama, Toru Asaka, Tsukasa Hirayama, Hideki Fujita, Craig A. J. Fisher, Katsumasa Nonaka, Yuji Sugita, Zempachi Ogumi

Journal:

Angewandte Chemie International Edition

Year:

2010

Language:

english

File:

PDF, 620 KB

english, 2010

5

Genetically modified rice seeds accumulating GLP-1 analogue stimulate insulin secretion from a mouse pancreatic beta-cell line

Koichi Sugita, Saori Endo-Kasahara, Yoshifumi Tada, Yang Lijun, Hiroshi Yasuda, Yuji Hayashi, Takahito Jomori, Hiroyasu Ebinuma, Fumio Takaiwa

Journal:

Year:

2005

Language:

english

File:

PDF, 138 KB

english, 2005

6

Surface-Tension Replica-Exchange Molecular Dynamics Method for Efficient Conformational Sampling of Biological Membrane Systems

Mori, Takaharu, Jung, Jaewoon, Sugita, Yuji

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

7

Cell cycle progression, but not genotoxic activity, mainly contributes to citrinin-induced renal carcinogenesis

Kuroda, Ken, Ishii, Yuji, Takasu, Shinji, Kijima, Aki, Matsushita, Kohei, Watanabe, Maiko, Takahashi, Haruo, Sugita-Konishi, Yoshiko, Sakai, Hiroki, Yanai, Tokuma, Nohmi, Takehiko, Ogawa, Kumiko, Umem

Journal:

Year:

2013

Language:

english

File:

PDF, 1.88 MB

english, 2013

8

Analysis of Gene Expressions of T Cells from Children with Acute Exacerbations of Asthma

Katsunuma, Toshio, Kawahara, Hidetoshi, Suda, Tomoko, Ishii, Tetsuji, Ohya, Yukihiro, Akasawa, Akira, Saito, Hirohisa, Oshida, Tadahiro, Sugita, Yuji

Journal:

International Archives of Allergy and Immunology

Year:

2004

Language:

english

File:

PDF, 117 KB

english, 2004

9

Parallel implementation of 3D FFT with volumetric decomposition schemes for efficient molecular dynamics simulations

Jung, Jaewoon, Kobayashi, Chigusa, Imamura, Toshiyuki, Sugita, Yuji

Journal:

Computer Physics Communications

Year:

2016

Language:

english

File:

PDF, 827 KB

english, 2016

10

Modeling the Transition State of Enzyme-catalyzed Phosphoryl Transfer Reaction Using QM/MM Method

RE, Suyong, SUGITA, Yuji

Journal:

YAKUGAKU ZASSHI

Year:

2011

Language:

english

File:

PDF, 1.90 MB

english, 2011

11

Friction and Wear of Cast Iron under High Sliding Speed and High Contact Pressure. 2nd Report. The Condition of the Transition from Mild Wear to Severe Wear.

HAYASHI, Kazuhiro, HIRASATA, Keiji, KAMENAKA, Yuji, SUGITA, Kazuhiko

Journal:

TRANSACTIONS OF THE JAPAN SOCIETY OF MECHANICAL ENGINEERS Series C

Year:

1997

File:

PDF, 1013 KB

1997

12

In-Service Degradation of Metallurgical and Mechanical Properties of Aluminized Coatings and Substrates in Gas Turbine Blades.

Ito, Akihiro, Sugiyama, Kazuhiro, Shinohara, Nobuo, Sugita, Yuji, Sakurai, Shigeo, Kameda, Jun

Journal:

MATERIALS TRANSACTIONS

Year:

2002

Language:

english

File:

PDF, 2.27 MB

english, 2002

13

GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms

Kobayashi, Chigusa, Jung, Jaewoon, Matsunaga, Yasuhiro, Mori, Takaharu, Ando, Tadashi, Tamura, Koichi, Kamiya, Motoshi, Sugita, Yuji

Journal:

Journal of Computational Chemistry

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

14

Molecular Dynamics Simulations of Biomolecules in Cellular Environments

Sugita, Yuji, Yu, Isseki, Feig, Michael

Journal:

Molecular Science

Year:

2017

File:

PDF, 4.85 MB

2017

15

Liposarcoma Arising in the Foot: A Case Report

Matsuo, Toshihiro, Sugita, Takashi, Shimose, Shoji, Kubo, Tadahiko, Yasunaga, Yuji, Ochi, Mitsuo

Journal:

Case Reports in Medicine

Year:

2009

Language:

english

File:

PDF, 1.64 MB

english, 2009

16

Frontiers in CryoEM Modeling

Palermo, Giulia, Sugita, Yuji, Wriggers, Willy, Amaro, Rommie E.

Journal:

Journal of Chemical Information and Modeling

Year:

2019

File:

PDF, 308 KB

2019

17

Vacancy Clustering Behavior in Low Alloy Martensitic Steel during Tensile Deformation with Hydrogen Charging; 低合金マルテンサイト鋼の水素チャージ下での引張変形における空孔凝集挙動;

Omura, Tomohiko, Tomatsu, Kota, Sakiyama, Yuji, Sugita, Kazuki, Mizuno, Masataka, Araki, Hideki, Shirai, Yasuharu

Journal:

Tetsu-to-Hagane

Year:

2018

File:

PDF, 1.91 MB

2018

18

A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations

Tan, Cheng, Jung, Jaewoon, Kobayashi, Chigusa, Sugita, Yuji

Journal:

The Journal of Chemical Physics

Year:

2020

File:

PDF, 2.75 MB

2020

19

Improved protein free energy calculation by more accurate treatment of nonbonded energy: Application to chymotrypsin inhibitor 2, V57A

Yuji Sugita, Akio Kitao

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 347 KB

english, 1998

20

Generalized-ensemble algorithms for molecular simulations of biopolymers

Ayori Mitsutake, Yuji Sugita, Yuko Okamoto

Journal:

Year:

2001

Language:

english

File:

PDF, 671 KB

english, 2001

21

Dynamic Visualization of the Electric Potential in an All-Solid-State Rechargeable Lithium Battery

Kazuo Yamamoto, Yasutoshi Iriyama, Toru Asaka, Tsukasa Hirayama, Hideki Fujita, Craig A. J. Fisher, Katsumasa Nonaka, Yuji Sugita, Zempachi Ogumi

Journal:

Angewandte Chemie

Year:

2010

Language:

english

File:

PDF, 601 KB

english, 2010

22

Alternative complement pathway-mediated myeloid cell cytotoxicity: Repertoire of membrane factors participating in regulation of C3 deposition and cytolysis

Misako Matsumoto, Yuji Sugita, Tsukasa Seya

Journal:

European Journal of Immunology

Year:

1991

Language:

english

File:

PDF, 754 KB

english, 1991

23

Natural antibodies against the immunoglobulin F(ab′)2 fragment cause elimination of antigens recognized by the F(ab′)2 from the circulation

Shinya Yano, Seiji Kaku, Ken-Ichi Suzuki, Chinami Terazaki, Toshiko Sakayori, Tomihisa Kawasaki, Koji Kawamura, Yuji Sugita, Kenji Hoshino, Yasuhiko Masuho

Journal:

European Journal of Immunology

Year:

1995

Language:

english

File:

PDF, 587 KB

english, 1995

24

Evaluation of systemic chemotherapy with magnetic liposomal doxorubicin and a dipole external electromagnet

Hiroo Nobuto, Takashi Sugita, Tadahiko Kubo, Shoji Shimose, Yuji Yasunaga, Teruo Murakami, Mitsuo Ochi

Journal:

International Journal of Cancer

Year:

2004

Language:

english

File:

PDF, 1018 KB

english, 2004

25

Injectable magnetic liposomes as a novel carrier of recombinant human BMP-2 for bone formation in a rat bone-defect model

Toshihiro Matsuo, Takashi Sugita, Tadahiko Kubo, Yuji Yasunaga, Mitsuo Ochi, Teruo Murakami

Journal:

Journal of Biomedical Materials Research Part A

Year:

2003

Language:

english

File:

PDF, 337 KB

english, 2003

26

Efficiency of magnetic liposomal transforming growth factor-beta 1 in the repair of articular cartilage defects in a rabbit model

Haruyuki Tanaka, Takashi Sugita, Yuji Yasunaga, Shouji Shimose, Masataka Deie, Tadahiko Kubo, Teruo Murakami, Mitsuo Ochi

Journal:

Journal of Biomedical Materials Research Part A

Year:

2005

Language:

english

File:

PDF, 644 KB

english, 2005

27

Geometrically associative yet electronically dissociative character in the transition state of enzymatic reversible phosphorylation

Suyong Re, Takashi Imai, Jaewoon Jung, Seiichiro Ten-No, Yuji Sugita

Journal:

Journal of Computational Chemistry

Year:

2011

Language:

english

File:

PDF, 2.79 MB

english, 2011

28

Analysis of lipid surface area in protein–membrane systems combining voronoi tessellation and monte carlo integration methods

Takaharu Mori, Fumiko Ogushi, Yuji Sugita

Journal:

Journal of Computational Chemistry

Year:

2012

Language:

english

File:

PDF, 2.27 MB

english, 2012

29

Antibacterial action on pathogenic bacterial spore by green tea catechins

Yukiko Hara-Kudo, Akiko Yamasaki, Miho Sasaki, Tsutomu Okubo, Yuji Minai, Minoru Haga, Kazuo Kondo, Yoshiko Sugita-Konishi

Journal:

Journal of the Science of Food and Agriculture

Year:

2005

Language:

english

File:

PDF, 188 KB

english, 2005

30

Secondary-structure preferences of force fields for proteins evaluated by generalized-ensemble simulations

Takao Yoda, Yuji Sugita, Yuko Okamoto

Journal:

Chemical Physics

Year:

2004

Language:

english

File:

PDF, 735 KB

english, 2004

31

Comparisons of force fields for proteins by generalized-ensemble simulations

Takao Yoda, Yuji Sugita, Yuko Okamoto

Journal:

Chemical Physics Letters

Year:

2004

Language:

english

File:

PDF, 363 KB

english, 2004

32

Physical basis for characterizing native structures of proteins

Yuichi Harano, Roland Roth, Yuji Sugita, Mitsunori Ikeguchi, Masahiro Kinoshita

Journal:

Chemical Physics Letters

Year:

2007

Language:

english

File:

PDF, 219 KB

english, 2007

33

A two-dimensional energy surface of the phosphoryl transfer reaction catalyzed by phosphoserine phosphatase

Suyong Re, Jaewoon Jung, Seiichiro Ten-no, Yuji Sugita

Journal:

Chemical Physics Letters

Year:

2009

Language:

english

File:

PDF, 798 KB

english, 2009

34

An extreame disposition method for low-level radioactive wastes using supercritical water (3)

Wataru Sugiyama, Tomoo Yamamura, Ki Chul Park, Hiroshi Tomiyasu, Yoshinobu Shiokawa, Hidetsugu Okada, Yuji Sugita

Journal:

Progress in Nuclear Energy

Year:

2005

Language:

english

File:

PDF, 351 KB

english, 2005

35

Recovery of radioactivity as solids from nonflammable organic low-level radioactive wastes using supercritical water mixed with RuO2

Wataru Sugiyama, Tomoo Yamamura, Ki Chul Park, Hiroshi Tomiyasu, Isamu Satoh, Yoshinobu Shiokawa, Hidetsugu Okada, Yuji Sugita

Journal:

The Journal of Supercritical Fluids

Year:

2005

Language:

english

File:

PDF, 115 KB

english, 2005

36

Ab initio replica-exchange Monte Carlo method for cluster studies

Yasuyuki Ishikawa, Yuji Sugita, Takeshi Nishikawa, Yuko Okamoto

Journal:

Chemical Physics Letters

Year:

2001

Language:

english

File:

PDF, 266 KB

english, 2001

37

Replica-exchange molecular dynamics method for protein folding

Yuji Sugita, Yuko Okamoto

Journal:

Chemical Physics Letters

Year:

1999

Language:

english

File:

PDF, 314 KB

english, 1999

38

Generalized-ensemble simulations of spin systems and protein systems

Takehiro Nagasima, Yuji Sugita, Ayori Mitsutake, Yuko Okamoto

Journal:

Computer Physics Communications

Year:

2002

Language:

english

File:

PDF, 197 KB

english, 2002

39

Angiomatous variant of pleomorphic xanthoastrocytoma in a patient with a 20-year history of epilepsy

Yasuo Sugita, Itsurou Hayashi, Takachika Aoki, Minoru Shigemori, Minoru Morimatsu, Yuji Okamoto, Kazunori Kajiwara

Journal:

Year:

1999

Language:

english

File:

PDF, 768 KB

english, 1999

40

A New Heparin-Bonded Dense Membrane Lung Combined with Minimal Systemic Heparinization Prolonged Extracorporeal Lung Assist in Goats

Taisuke Okamoto, Masafumi Tashiro, Yuji Sakanashi, Hironari Tanimoto, Takashi Imaizumi, Michiko Sugita, Hidenori Terasaki

Journal:

Artificial Organs

Year:

1998

Language:

english

File:

PDF, 1.28 MB

english, 1998

41

Experimental Evaluation of the V-Point Heparin-Bonding System Applied to a Dense-Membrane Artificial Lung During 24-Hour Extracorporeal Circulation in Beagles

Masafumi Tashiro, Taisuke Okamoto, Yuji Sakanashi, Hushan Ao, Takashi Imaizumi, Hironari Tanimoto, Fumiharu Yanagi, Michiko Sugita, Rishichi Mimura, Hidenori Terasaki

Journal:

Artificial Organs

Year:

2001

Language:

english

File:

PDF, 543 KB

english, 2001

42

Cooperative folding mechanism of a β-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation

Takao Yoda, Yuji Sugita, Yuko Okamoto

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.00 MB

english, 2007

43

Free-energy function based on an all-atom model for proteins

Takashi Yoshidome, Koji Oda, Yuichi Harano, Roland Roth, Yuji Sugita, Mitsunori Ikeguchi, Masahiro Kinoshita

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 543 KB

english, 2009

44

Free-energy function for discriminating the native fold of a protein from misfolded decoys

Satoshi Yasuda, Takashi Yoshidome, Yuichi Harano, Roland Roth, Hiraku Oshima, Koji Oda, Yuji Sugita, Mitsunori Ikeguchi, Masahiro Kinoshita

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 688 KB

english, 2011

45

Synthesis and evaluation of radioiodinated (S,S)-2-(α-(2-iodophenoxy)benzyl)morpholine for imaging brain norepinephrine transporter

Naoki Kanegawa, Yasushi Kiyono, Hiroyuki Kimura, Taku Sugita, Satomi Kajiyama, Hidekazu Kawashima, Masashi Ueda, Yuji Kuge, Hideo Saji

Journal:

European Journal of Nuclear Medicine and Molecular Imaging

Year:

2006

Language:

english

File:

PDF, 329 KB

english, 2006

46

Rigid bridging of massive femur defect using double vascularized fibula graft with hydroxyapatite

Toshihiro Matsuo, Takashi Sugita, Shoji Shimose, Tadahiko Kubo, Toru Sunagawa, Yuji Yasunaga, Mitsuo Ochi

Journal:

Archives of Orthopaedic and Trauma Surgery

Year:

2008

Language:

english

File:

PDF, 229 KB

english, 2008

47

Determining the location of a deceased mother tree and estimating forest regeneration variables by use of microsatellites and spatial genetic models

Kenichiro Shimatani, Megumi Kimura, Keiko Kitamura, Yoshihisa Suyama, Yuji Isagi, Hisashi Sugita

Journal:

Population Ecology

Year:

2007

Language:

english

File:

PDF, 515 KB

english, 2007

48

Contrast-enhanced sonography of pancreatic ductal carcinoma using agent detection imaging

Naohiro Ichino, Yuji Horiguchi, Hideo Imai, Keisuke Osakabe, Tohru Nishikawa, Yukiko Sugita, Hideko Utsugi, Yoko Togo, Tomoko Sawai, Yoshikazu Mizoguchi

Journal:

Journal of Medical Ultrasonics

Year:

2006

Language:

english

File:

PDF, 592 KB

english, 2006

49

(−)-Epigallocatechin gallate suppresses the cytotoxicity induced by trichothecene mycotoxins in mouse cultural macrophages

Kei-ichi Sugiyama, Mawo Kinoshita, Yoichi Kamata, Yuji Minai, Yoshiko Sugita-Konishi

Journal:

Mycotoxin Research

Year:

2011

Language:

english

File:

PDF, 232 KB

english, 2011

50

Free energy calculations for DNA base stacking by replica-exchange umbrella sampling

Katsumi Murata, Yuji Sugita, Yuko Okamoto

Journal:

Chemical Physics Letters

Year:

2004

Language:

english

File:

PDF, 313 KB

english, 2004

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